Overview
A bug has been confirmed in versions 3.6.19 and 3.6.20 of the Omeka S IIIF Server module where URIs are malformed.
Specifically, the FQDN becomes incorrect, like the following.
https://xxx.yyy.zzz.jp//aaa.bbb.ccc.jp/iiif/3/1234/manifest
Workaround
As of the time of writing this article, version 3.6.21 has not been released, so I recommend using version 3.6.18 or earlier of the module.
Summary
I hope this serves as a useful reference.